cubids.workflows.apply

apply(bids_dir, use_datalad, acq_group_level, config, edited_summary_tsv, edited_tsv_prefix, files_tsv, new_tsv_prefix, output_prefix, container)

Apply the tsv changes.

Parameters:

• bids_dir (pathlib.Path) – Path to the BIDS directory.

• use_datalad (bool) – Use datalad to track changes.

• acq_group_level ({"subject", "session"}) – Level at which acquisition groups are created.

• config (pathlib.Path) – Path to the grouping config file.

• edited_summary_tsv (pathlib.Path) – Path to the edited summary tsv.

• edited_tsv_prefix (pathlib.Path) – Path to the edited tsv prefix.

• files_tsv (pathlib.Path) – Path to the files tsv.

• new_tsv_prefix (pathlib.Path) – Path to the new tsv prefix.

• output_prefix (pathlib.Path) – Output filename prefix.

• container (str) – Container in which to run the workflow.